NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Average percent identity 99.1
Fraction of bases aligned 1.0
Mean read length 1,969.2
Mean read quality 22.3
Median percent identity 99.2
Median read length 1,970.0
Median read quality 22.2
Number of reads 214,992.0
Read length N50 1,970.0
STDEV read length 20.4
Total bases 423,363,364.0
Total bases aligned 423,041,993.0
Number, percentage and megabases of reads above quality cutoffs
>Q10 214992 (100.0%) 423.4Mb
>Q15 214991 (100.0%) 423.4Mb
>Q20 214981 (100.0%) 423.4Mb
>Q25 28835 (13.4%) 56.8Mb
>Q30 1313 (0.6%) 2.6Mb
Top 5 highest mean basecall quality scores and their read lengths
1 40.1 (1965; c392d76a-4863-468c-8d62-3228e4df2cb9)
2 39.1 (1972; 8249b6fd-d5eb-45e5-9f90-4f634885fa56)
3 38.0 (1967; 533b5404-8d73-4499-a820-a635d74f058a)
4 37.9 (1973; ca2b5b28-2840-47a9-b0ed-dc92bf31f6b5)
5 37.8 (1970; b76f9f09-9834-44d0-972e-421428bb84f6)
Top 5 longest reads and their mean basecall quality score
1 2182 (25.8; dfa94a02-cf06-49b1-a057-7128c71e1d3b)
2 2179 (21.0; 5a8acfe4-4b12-433f-873a-da8930c57d18)
3 2166 (20.5; 95bb9e4e-8cf4-4c81-a56c-474d1f8617b4)
4 2164 (20.7; 462b5d3e-a77c-4d66-9a2f-58872a367efb)
5 2163 (21.2; e7233694-1f21-4afb-b499-cdbf9b140294)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality kde plot

Aligned read lengths vs Sequenced read length plot using dots

Aligned read lengths vs Sequenced read length kde plot

Read mapping quality vs Average basecall quality plot using dots

Read mapping quality vs Average basecall quality kde plot

Read length vs Read mapping quality plot using dots

Read length vs Read mapping quality kde plot

Percent identity vs Average Base Quality plot using dots

Percent identity vs Average Base Quality kde plot

Aligned read length vs Percent identity plot using dots

Aligned read length vs Percent identity kde plot

Dynamic histogram of percent identity